Publications

Publications where the Bioinformatics Unit was involved (either with authorship or in acknowledgments).

2016
Vasconcelos FF, Sessa A, Laranjeira C, Raposo AASF, Teixeira V, Hagey DW, Tomaz DM, Muhr J, Broccoli V, Castro DS.  2016.  MyT1 Counteracts the Neural Progenitor Program to Promote Vertebrate Neurogenesis.. Cell Rep. 17(2):469-483.
Zerbino DR, Johnson N, Juetteman T, Sheppard D, Wilder SP, Lavidas I, Nuhn M, Perry E, Raffaillac-Desfosses Q, Sobral D et al..  2016.  Ensembl regulation resources.. Database (Oxford). 2016
2015
Raposo AASF, Vasconcelos FF, Drechsel D, Marie C, Johnston C, Dolle D, Bithell A, Gillotin S, van den Berg DLC, Ettwiller L et al..  2015.  Ascl1 Coordinately Regulates Gene Expression and the Chromatin Landscape during Neurogenesis.. Cell Rep.
Duarte M, Carvalho C, Bernardo S, Barros SVanessa, Benevides S, Flor L, Monteiro M, Marques I, Henriques M, Barros SC et al..  2015.  Rabbit haemorrhagic disease virus 2 (RHDV2) outbreak in Azores: Disclosure of common genetic markers and phylogenetic segregation within the European strains.. Infect Genet Evol. 35:163-171.
Gilchrist MJ, Sobral D, Khoueiry P, Daian F, Laporte B, Patrushev I, Matsumoto J, Dewar K, Hastings KEM, Satou Y et al..  2015.  A pipeline for the systematic identification of non-redundant full-ORF cDNAs for polymorphic and evolutionary divergent genomes: Application to the ascidian Ciona intestinalis.. Dev Biol.
2014
Marques I, Almeida P, Alves R, Dias MJoão, Godinho A, Pereira-Leal JB.  2014.  Bioinformatics projects supporting life-sciences learning in high schools.. PLoS Comput Biol. 10(1):e1003404.
Bouzid D, Fourati H, Amouri A, Marques I, Abida O, Tahri N, Penha-Goncalves C, Masmoudi H.  2014.  Autoimmune diseases association study with the KIAA1109-IL2-IL21 region in a Tunisian population.. Mol Biol Rep. 41(11):7133-9.
Barroso-Batista J, Sousa A, Lourenço M, Bergman M-L, Sobral D, Demengeot J, Xavier KB, Gordo I.  2014.  The first steps of adaptation of Escherichia coli to the gut are dominated by soft sweeps.. PLoS Genet. 10(3):e1004182.
Correia C, Diekmann Y, Vicente AM, Pereira-Leal JB.  2014.  Hope for GWAS: relevant risk genes uncovered from GWAS statistical noise.. Int J Mol Sci. 15(10):17601-21.
Guilgur LGastón, Prudêncio P, Sobral D, Liszekova D, Rosa A, Martinho RGoncalo.  2014.  Requirement for highly efficient pre-mRNA splicing during Drosophila early embryonic development.. Elife. 3:e02181.

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